已测序真核生物基因组列表
维基百科，自由的百科全书
已测序真核生物基因组列表包括所有已知的，可以公开获取已组装、注释和发表的细胞核和细胞器基因组序列的真核生物；基因组草图不包括在内，只有细胞器序列的物种也不包括。
1977年，第一次出现DNA测序。第一个拥有全基因组序列的活体生物是细菌流感嗜血杆菌，在1995年。1996年，酿酒酵母是第一个发布的真核生物基因组序列。1998年，发布了第一个多细胞真核生物基因组序列，秀丽隐杆线虫。
目录 |
原生生物 [编辑]
植物 [编辑]
藻类 [编辑]
苔藓植物 [编辑]
蕨类植物 [编辑]
单子叶植物 [编辑]
双子叶植物 [编辑]
| 物种学名 | 类型 | 关联 | 基因组大小 | 预测的基因数 | 机构 | 完成年份 |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | 模式植物 | 207 Mb[1] | 32,670[2] | University of Southern California and VIB, Gent | 2011[2] | |
| Arabidopsis thaliana 生态型:哥伦比亚 |
拟南芥 | 模式植物 | 119 Mb | 25,498,[3] 27,400,[4] 31,670 (UniProt) | Arabidopsis Genome Initiative[5] | 2000[3] |
| Brassica rapa | 油料作物, 中国白菜, turnip | 作物和模式生物 | 284 Mb[6] | 41,174[6] | 多中心合作 | 2011[6] |
| Cannabis sativa | Cannabis | Hemp and marijuana production | 534 Mb[7] | 30,074[7] | 多中心合作 | 2011[7] |
| Cucumis sativus | Cucumber 'Chinese long' inbred line 9930 | 蔬菜 | 367 Mb[8] | 26,682[8] | Chinese Academy of Agricultural Sciences, Beijing | 2009[8] |
| Fragaria vesca | 树莓 | 果树 | 280 Mb[9] | 25,050[9] | 多中心合作 | 2011[9] |
| Glycine max | Soybean Soyabean Soya | 蛋白和油料作物 | 1,100 Mb[10] | 46,430[10] | 普度大学 | 2010[10] |
| Jatropha curcas Palawan |
生物柴油作物 | Kazusa DNA Research Institute | 2010[11] | |||
| Lotus japonicus | Legume | Model legume | 417 Mb[12] | 30,799[12] | 多中心合作 | 2008[12] |
| Malus domestica | 苹果 ‘金冠’ | 果树 | 927 Mb[13] | 57,000[14] | 国际合作 | 2010[15][16][17] |
| Medicago truncatula | Medicago | Model organism for legume biology | 375 Mb[18] | 62,388[18] | 多中心合作 | 2011[18] |
| Populus trichocarpa | Balsam poplar or Black Cottonwood | Carbon sequestration, model tree, commercial use (timber), and comparison to A. thaliana | 550 Mb | 45,555[19] | The International Poplar Genome Consortium | 2006[19] |
| Ricinus communis | Castor bean | 油料作物 | 320 Mb[20] | 31,237[20] | multicenter collaboration | 2010[20] |
| Solanum tuberosum | 土豆 | 大田作物 | 844Mb[21] | 39,031[21] | multicenter collaboration | 2011[21] |
| Thellungiella parvula | 盐水芹 | Arabidopsis relative with high salt tolerance | 140 Mb[22] | 28,901[22] | multicenter collaboration | 2011[22] |
| Theobroma cacao | Cocoa, Criollo variety | Flavoring crop | 430Mb[23] | 28,798[23] | CIRAD, multiple institutions (separate project, Mars Inc., USDA)[24] |
2010[23][24] |
| Vitis vinifera | Grapevine PN40024 | 果树 | 490 Mb[25] | 30,434[25] | The French-Italian Public Consortium for Grapevine Genome Characterization | 2007[25] |
未发表的高等植物 [编辑]
动物 [编辑]
参见 [编辑]
参考资料 [编辑]
- ^ Ensembl entry
- ^ 2.0 2.1 Hu T, Pattyn P, Bakker EG, et al. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. 2011.April, 43 (5): 476–81. doi:10.1038/ng.807.
- ^ 3.0 3.1 The Arabidopsis Genome Initiative,. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 2000.December, 408 (6814): 796–815. doi:10.1038/35048692. PMID 11130711.
- ^ Ensembl entry
- ^ Arabidopsis Genome Initiative
- ^ 6.0 6.1 6.2 Wang X, Wang H, Wang J, et al.. The genome of the mesopolypoid crop species Brassica rapa. Nature Genetics. 2011, 43: 1035–1039. doi:10.1038/ng.919.
- ^ 7.0 7.1 7.2 van Bakel H, Stout JM, Cote AT, et al.. The draft genome and transcriptome of Cannabis sativa. Genome Biology. 2011, 12: R102. doi:10.1186/gb-2011-12-10-r102.
- ^ 8.0 8.1 8.2 Huang S, Li R, Zhang1 Z, et al.. The genome of the cucumber, Cucumis sativus L. Nature Genetics. 2009.December, 41 (12): 1275–. doi:10.1038/ng.475. PMID 19881527.
- ^ 9.0 9.1 9.2 Shulaev V, Sargent DJ, Crowhurst RN, et al.. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 2011, 43 (2): 109–116. doi:10.1038/ng.740. PMID 21186353.
- ^ 10.0 10.1 10.2 Huang S, Li R, Zhang1 Z, et al.. Genome sequence of the palaeopolyploid soybean. Nature. 2010.10 January, 463 (12): 178–183. Bibcode:2010Natur.463..178S. doi:10.1038/nature08670. PMID 20075913.
- ^ Sato S, Hirakawa H, Isobe S, et al.. Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.. DNA Research. 2011.February, 18 (1): 65–76. PMID 21149391.
- ^ 12.0 12.1 12.2 Sato S, Nakamura Y, Kaneko T, et al.. Genome structure of the legume, Lotus japonicus. DNA Research. 2008, 15 (4): 227–239. doi:10.1093/dnares/dsn008. PMC 2575887. PMID 18511435.
- ^ Han, Y.; Gasic, K.; Marron, B.; Beever, J.; Korban, S. A BAC-based physical map of the apple genome. Genomics. 2007, 89 (5): 630–637. doi:10.1016/j.ygeno.2006.12.010. PMID 17270394.
- ^ An Italian-led international research consortium decodes the apple genome AlphaGallileo August 29, 2010, Retrieved August 29, 2010
- ^ Velasco, R.; Zharkikh, A.; Affourtit, J.; Dhingra, A.; Cestaro, A.; Kalyanaraman, A.; Fontana, P.; Bhatnagar, S. et al. The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics. 2010, 42 (10): 833–839. doi:10.1038/ng.654. PMID 20802477.
- ^ Udanga, Romy. Mapping of apple genome sets scene for new types. Stuff.co.nz. 30 August 2010 [15 October 2011].
- ^ Scientists crack the genome of the apple
- ^ 18.0 18.1 18.2 Young ND, Debelle F, Oldroyd GED, et al.. The Medicago genome provides insight into the evolution of rizobial symbioses. Nature. 2011. doi:10.1038/nature10625.
- ^ 19.0 19.1 Tuskan GA, Difazio S, Jansson S, et al.. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 2006.September, 313 (5793): 1596–604. Bibcode:2006Sci...313.1596T. doi:10.1126/science.1128691. PMID 16973872.
- ^ 20.0 20.1 20.2 Chan AP, Crabtree J, Zhao Q, et al.. Draft genome sequence of the oilseed species Ricinus communis. Nature Biotechnology. 2010, 28 (9): "951–956". doi:10.1038/nbt.1674.
- ^ 21.0 21.1 21.2 Xu, X.; Pan, S.; Cheng, S.; Zhang, B.; Mu, D.; Ni, P.; Zhang, G.; Yang, S. et al. Genome sequence and analysis of the tuber crop potato. Nature. 2011, 475 (7355). doi:10.1038/nature10158.
- ^ 22.0 22.1 22.2 Dassanayake M, Oh D-H, Haas JS, et al.. The genome of the extremophile crucifer Thellungiella parvula. Nature Genetics. 2011, 43 (9): 913–918. doi:10.1038/ng.889.
- ^ 23.0 23.1 23.2 Argout, X.; Salse, J.; Aury, J. M.; Guiltinan, M. J.; Droc, G.; Gouzy, J.; Allegre, M.; Chaparro, C. et al. The genome of Theobroma cacao. Nature Genetics. 2010, 43 (2): 101–8. doi:10.1038/ng.736. PMID 21186351. 已忽略未知参数
|DUPLICATE DATA: doi=(帮助); [1] - ^ 24.0 24.1 Pennisi, E. Genomics Researchers Upset by Rivals' Publicity. Science. 2010, 329 (5999): 1585. Bibcode:2010Sci...329.1585P. doi:10.1126/science.329.5999.1585. PMID 20929817. 已忽略未知参数
|DUPLICATE DATA: doi=(帮助) [2] - ^ 25.0 25.1 25.2 Jaillon O, Aury JM, Noel B, et al.. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. 2007.September, 449 (7161): 463–7. Bibcode:2007Natur.449..463J. doi:10.1038/nature06148. PMID 17721507.
外部链接 [编辑]
- Diark - a resource for eukaryotic genome research
- EMBL-EBL Eukaryotic Genomes
- UCSC Genome Browser
- International Sequencing Consortium - Large-scale Sequencing Project Database
- Ensembl The Ensembl Genome Browser (includes draft and low coverage genomes)
- Fungal Genome Initiative (includes draft genomes)
- GOLD:Genomes OnLine Database v 3.0
- SUPERFAMILY comparative genomics database Includes genomes of all completely sequenced eukaryotes, and sophisticated datamining plus visualisation tools for analysis
- Rat Genome Database
|
|||||||||||||||||||
