- The Rfam Database
- Non-coding RNA database
- EumiR prediction of microRNA precursors based on Support Vector Machine.
- HairpinFetcher Prediction and analysis of hairpin forming potential in nucleic acids.
- RNA@IGIB group at the Institute of Genomics and Integrative Biology working on functional noncoding RNA biology.
- Wikiomics/RNA Provides links to a variety of ncRNA analysis tools for structure prediction, sequence alignment and homology search.
- miRacle Provides target search for microRNAs and other small non-coding RNAs based on an algorithm which incorporates RNA secondary structure.