长链非编码RNA数据库

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长链非编码RNA数据库,又称长链间隔区非编码RNA數據庫lncRNA數據庫,是收集了非编码RNA及其相关表达模式的数据库。长链非编码RNA是当前生物学和医学研究的前沿领域和热点[1][2]

例子[编辑]

数据库名 描述 类型 网站链接 参考文献
ChIPBase 对长链非编码RNA的表达图谱和转录调控提供全面的注释和鉴定 数据库 [1][永久失效連結] [3]
LNCipedia 用于注释人类的长链非编码RNA的序列和结构 数据库 [2] [4]
lncRNAdb 对功能的长链非编码RNA提供全面的注释 数据库 [3] [5]
NONCODE 对长链非编码RNA提供综合的注释 数据库 [4] [6]
NRED 对长链非编码RNA的表达注释 数据库 [5] [7]

参考资料[编辑]

  1. ^ John L. Rinn, Howard Y. Chang. Genome regulation by long noncoding RNAs. Annual Review of Biochemistry. 2012, 81: 145–166 [2019-02-12]. ISSN 1545-4509. PMC 3858397. PMID 22663078. doi:10.1146/annurev-biochem-051410-092902. 
  2. ^ Lance Martin, Howard Y. Chang. Uncovering the role of genomic "dark matter" in human disease. The Journal of Clinical Investigation. 2012-5, 122 (5): 1589–1595 [2019-02-12]. ISSN 1558-8238. PMC 3336981. PMID 22546862. doi:10.1172/JCI60020. 
  3. ^ Jian-Hua Yang, Jun-Hao Li, Shan Jiang, Hui Zhou, Liang-Hu Qu. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Research. 2013-1, 41 (Database issue): D177–187 [2019-02-12]. ISSN 1362-4962. PMC 3531181. PMID 23161675. doi:10.1093/nar/gks1060. 
  4. ^ Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh. LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Research. 2013-1, 41 (Database issue): D246–251 [2019-02-12]. ISSN 1362-4962. PMC 3531107. PMID 23042674. doi:10.1093/nar/gks915. 
  5. ^ Paulo P. Amaral, Michael B. Clark, Dennis K. Gascoigne, Marcel E. Dinger, John S. Mattick. lncRNAdb: a reference database for long noncoding RNAs. Nucleic Acids Research. 2011-1, 39 (Database issue): D146–151 [2019-02-12]. ISSN 1362-4962. PMC 3013714. PMID 21112873. doi:10.1093/nar/gkq1138. 
  6. ^ Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao. NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Research. 2012-1, 40 (Database issue): D210–215 [2019-02-12]. ISSN 1362-4962. PMC 3245065. PMID 22135294. doi:10.1093/nar/gkr1175. 
  7. ^ Marcel E. Dinger, Ken C. Pang, Tim R. Mercer, Mark L. Crowe, Sean M. Grimmond, John S. Mattick. NRED: a database of long noncoding RNA expression. Nucleic Acids Research. 2009-1, 37 (Database issue): D122–126 [2019-02-12]. ISSN 1362-4962. PMC 2686506. PMID 18829717. doi:10.1093/nar/gkn617.