已测序植物基因组列表

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已测序高等植物基因组列表包括已经完成并发表的的高等植物基因组,及计划中的高等植物基因组。

藻类[编辑]

苔藓植物[编辑]

蕨类植物[编辑]

单子叶植物[编辑]

双子叶植物[编辑]

物种学名 类型 关联 基因组大小 预测的基因数 机构 完成年份
Arabidopsis lyrata 模式植物 207 Mb[1] 32,670[2] University of Southern California and VIB, Gent 2011[2]
Arabidopsis thaliana
生态型:哥伦比亚
拟南芥 模式植物 119 Mb 25,498,[3] 27,400,[4] 31,670 (UniProt) Arabidopsis Genome Initiative[5] 2000[3]
Brassica rapa 油料作物, 中国白菜, turnip 作物和模式生物 284 Mb[6] 41,174[6] 多中心合作 2011[6]
Cannabis sativa Cannabis Hemp and marijuana production 534 Mb[7] 30,074[7] 多中心合作 2011[7]
Cucumis sativus Cucumber 'Chinese long' inbred line 9930 蔬菜 367 Mb[8] 26,682[8] Chinese Academy of Agricultural Sciences, Beijing 2009[8]
Fragaria vesca 树莓 果树 280 Mb[9] 25,050[9] 多中心合作 2011[9]
Glycine max Soybean Soyabean Soya 蛋白和油料作物 1,100 Mb[10] 46,430[10] 普度大学 2010[10]
Jatropha curcas
Palawan
生物柴油作物 Kazusa DNA Research Institute 2010[11]
Lotus japonicus Legume Model legume 417 Mb[12] 30,799[12] 多中心合作 2008[12]
Malus domestica 苹果 ‘金冠’ 果树 927 Mb[13] 57,000[14] 国际合作 2010[15][16][17]
Medicago truncatula Medicago Model organism for legume biology 375 Mb[18] 62,388[18] 多中心合作 2011[18]
Populus trichocarpa Balsam poplar or Black Cottonwood Carbon sequestration, model tree, commercial use (timber), and comparison to A. thaliana 550 Mb 45,555[19] The International Poplar Genome Consortium 2006[19]
Ricinus communis Castor bean 油料作物 320 Mb[20] 31,237[20] multicenter collaboration 2010[20]
Solanum tuberosum 土豆 大田作物 844Mb[21] 39,031[21] multicenter collaboration 2011[21]
Thellungiella parvula 盐水芹 Arabidopsis relative with high salt tolerance 140 Mb[22] 28,901[22] multicenter collaboration 2011[22]
Theobroma cacao Cocoa, Criollo variety Flavoring crop 430Mb[23] 28,798[23] CIRAD, multiple institutions
(separate project, Mars Inc., USDA)[24]
2010[23][24]
Vitis vinifera Grapevine PN40024 果树 490 Mb[25] 30,434[25] The French-Italian Public Consortium for Grapevine Genome Characterization 2007[25]

参考资料[编辑]

  1. ^ Ensembl entry
  2. ^ 2.0 2.1 Hu T, Pattyn P, Bakker EG; 等. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nature Genetics. April 2011, 43 (5): 476–81. doi:10.1038/ng.807. 
  3. ^ 3.0 3.1 The Arabidopsis Genome Initiative,. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. December 2000, 408 (6814): 796–815. PMID 11130711. doi:10.1038/35048692. 
  4. ^ Ensembl entry
  5. ^ Arabidopsis Genome Initiative 互联网档案馆存檔,存档日期2006-02-07.
  6. ^ 6.0 6.1 6.2 Wang X, Wang H, Wang J; 等. The genome of the mesopolypoid crop species Brassica rapa. Nature Genetics. 2011, 43: 1035–1039. doi:10.1038/ng.919. 
  7. ^ 7.0 7.1 7.2 van Bakel H, Stout JM, Cote AT; 等. The draft genome and transcriptome of Cannabis sativa. Genome Biology. 2011, 12: R102. doi:10.1186/gb-2011-12-10-r102. 
  8. ^ 8.0 8.1 8.2 Huang S, Li R, Zhang1 Z; 等. The genome of the cucumber, Cucumis sativus L. Nature Genetics. December 2009, 41 (12): 1275–. PMID 19881527. doi:10.1038/ng.475. 
  9. ^ 9.0 9.1 9.2 Shulaev V, Sargent DJ, Crowhurst RN; 等. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 2011, 43 (2): 109–116. PMID 21186353. doi:10.1038/ng.740. 
  10. ^ 10.0 10.1 10.2 Huang S, Li R, Zhang1 Z; 等. Genome sequence of the palaeopolyploid soybean. Nature. 10 January 2010, 463 (12): 178–183. Bibcode:2010Natur.463..178S. PMID 20075913. doi:10.1038/nature08670. 
  11. ^ Sato S, Hirakawa H, Isobe S; 等. Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L.. DNA Research. February 2011, 18 (1): 65–76. PMID 21149391. 
  12. ^ 12.0 12.1 12.2 Sato S, Nakamura Y, Kaneko T; 等. Genome structure of the legume, Lotus japonicus. DNA Research. 2008, 15 (4): 227–239. PMC 2575887. PMID 18511435. doi:10.1093/dnares/dsn008. 
  13. ^ Yuepeng Han, Ksenija Gasic, Brandy Marron, Jonathan E. Beever, Schuyler S. Korban. A BAC-based physical map of the apple genome. Genomics: 630–637. [2018-04-02]. doi:10.1016/j.ygeno.2006.12.010. 
  14. ^ An Italian-led international research consortium decodes the apple genome AlphaGallileo August 29, 2010, Retrieved August 29, 2010
  15. ^ Riccardo Velasco, Andrey Zharkikh, Jason Affourtit, Amit Dhingra, Alessandro Cestaro, Ananth Kalyanaraman, Paolo Fontana, Satish K Bhatnagar, Michela Troggio, Dmitry Pruss, Silvio Salvi, Massimo Pindo, Paolo Baldi, Sara Castelletti, Marina Cavaiuolo, Giuseppina Coppola, Fabrizio Costa, Valentina Cova, Antonio Dal Ri, Vadim Goremykin, Matteo Komjanc, Sara Longhi, Pierluigi Magnago, Giulia Malacarne, Mickael Malnoy, Diego Micheletti, Marco Moretto, Michele Perazzolli, Azeddine Si-Ammour, Silvia Vezzulli, Elena Zini, Glenn Eldredge, Lisa M Fitzgerald, Natalia Gutin, Jerry Lanchbury, Teresita Macalma, Jeff T Mitchell, Julia Reid, Bryan Wardell, Chinnappa Kodira, Zhoutao Chen, Brian Desany, Faheem Niazi, Melinda Palmer, Tyson Koepke, Derick Jiwan, Scott Schaeffer, Vandhana Krishnan, Changjun Wu, Vu T Chu, Stephen T King, Jessica Vick, Quanzhou Tao, Amy Mraz, Aimee Stormo, Keith Stormo, Robert Bogden, Davide Ederle, Alessandra Stella, Alberto Vecchietti, Martin M Kater, Simona Masiero, Pauline Lasserre, Yves Lespinasse, Andrew C Allan, Vincent Bus, David Chagné, Ross N Crowhurst, Andrew P Gleave, Enrico Lavezzo, Jeffrey A Fawcett, Sebastian Proost, Pierre Rouzé, Lieven Sterck, Stefano Toppo, Barbara Lazzari, Roger P Hellens, Charles-Eric Durel, Alexander Gutin, Roger E Bumgarner, Susan E Gardiner, Mark Skolnick, Michael Egholm, Yves Van de Peer, Francesco Salamini, Roberto Viola. The genome of the domesticated apple (Malus × domestica Borkh.). Nature Genetics. 2010/10, 42 (10): 833–839 [2018-04-02]. ISSN 1546-1718. doi:10.1038/ng.654 (英语). 
  16. ^ Udanga, Romy. Mapping of apple genome sets scene for new types. Stuff.co.nz. 30 August 2010 [15 October 2011]. 
  17. ^ Scientists crack the genome of the apple
  18. ^ 18.0 18.1 18.2 Young ND, Debelle F, Oldroyd GED; 等. The Medicago genome provides insight into the evolution of rizobial symbioses. Nature. 2011. doi:10.1038/nature10625. 
  19. ^ 19.0 19.1 Tuskan GA, Difazio S, Jansson S; 等. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. September 2006, 313 (5793): 1596–604. Bibcode:2006Sci...313.1596T. PMID 16973872. doi:10.1126/science.1128691. 
  20. ^ 20.0 20.1 20.2 Chan AP, Crabtree J, Zhao Q; 等. Draft genome sequence of the oilseed species Ricinus communis. Nature Biotechnology. 2010, 28 (9): "951–956". doi:10.1038/nbt.1674. 
  21. ^ 21.0 21.1 21.2 Xun Xu, Shengkai Pan, Shifeng Cheng, Bo Zhang, Desheng Mu, Peixiang Ni, Gengyun Zhang, Shuang Yang, Ruiqiang Li, Jun Wang, Gisella Orjeda, Frank Guzman, Michael Torres, Roberto Lozano, Olga Ponce, Diana Martinez, Germán De la Cruz, S. K. Chakrabarti, Virupaksh U. Patil, Konstantin G. Skryabin, Boris B. Kuznetsov, Nikolai V. Ravin, Tatjana V. Kolganova, Alexey V. Beletsky, Andrei V. Mardanov, Alex Di Genova, Daniel M. Bolser, David M. A. Martin, Guangcun Li, Yu Yang, Hanhui Kuang, Qun Hu, Xingyao Xiong, Gerard J. Bishop, Boris Sagredo, Nilo Mejía, Wlodzimierz Zagorski, Robert Gromadka, Jan Gawor, Pawel Szczesny, Sanwen Huang, Zhonghua Zhang, Chunbo Liang, Jun He, Ying Li, Ying He, Jianfei Xu, Youjun Zhang, Binyan Xie, Yongchen Du, Dongyu Qu, Merideth Bonierbale, Marc Ghislain, Maria del Rosario Herrera, Giovanni Giuliano, Marco Pietrella, Gaetano Perrotta, Paolo Facella, Kimberly O’Brien, Sergio E. Feingold, Leandro E. Barreiro, Gabriela A. Massa, Luis Diambra, Brett R. Whitty, Brieanne Vaillancourt, Haining Lin, Alicia N. Massa, Michael Geoffroy, Steven Lundback, Dean DellaPenna, C. Robin Buell, Sanjeev Kumar Sharma, David F. Marshall, Robbie Waugh, Glenn J. Bryan, Marialaura Destefanis, Istvan Nagy, Dan Milbourne, Susan J. Thomson, Mark Fiers, Jeanne M. E. Jacobs, Kåre L. Nielsen, Mads Sønderkær, Marina Iovene, Giovana A. Torres, Jiming Jiang, Richard E. Veilleux, Christian W. B. Bachem, Jan de Boer, Theo Borm, Bjorn Kloosterman, Herman van Eck, Erwin Datema, Bas te Lintel Hekkert, Aska Goverse, Roeland C. H. J. van Ham, Richard G. F. Visser. Genome sequence and analysis of the tuber crop potato. Nature. 2011/07, 475 (7355): 189–195 [2018-04-02]. ISSN 1476-4687. doi:10.1038/nature10158 (英语). 
  22. ^ 22.0 22.1 22.2 Dassanayake M, Oh D-H, Haas JS; 等. The genome of the extremophile crucifer Thellungiella parvula. Nature Genetics. 2011, 43 (9): 913–918. doi:10.1038/ng.889. 
  23. ^ 23.0 23.1 23.2 Xavier Argout, Jerome Salse, Jean-Marc Aury, Mark J Guiltinan, Gaetan Droc, Jerome Gouzy, Mathilde Allegre, Cristian Chaparro, Thierry Legavre, Siela N Maximova, Michael Abrouk, Florent Murat, Olivier Fouet, Julie Poulain, Manuel Ruiz, Yolande Roguet, Maguy Rodier-Goud, Jose Fernandes Barbosa-Neto, Francois Sabot, Dave Kudrna, Jetty Siva S Ammiraju, Stephan C Schuster, John E Carlson, Erika Sallet, Thomas Schiex, Anne Dievart, Melissa Kramer, Laura Gelley, Zi Shi, Aurélie Bérard, Christopher Viot, Michel Boccara, Ange Marie Risterucci, Valentin Guignon, Xavier Sabau, Michael J Axtell, Zhaorong Ma, Yufan Zhang, Spencer Brown, Mickael Bourge, Wolfgang Golser, Xiang Song, Didier Clement, Ronan Rivallan, Mathias Tahi, Joseph Moroh Akaza, Bertrand Pitollat, Karina Gramacho, Angélique D'Hont, Dominique Brunel, Diogenes Infante, Ismael Kebe, Pierre Costet, Rod Wing, W Richard McCombie, Emmanuel Guiderdoni, Francis Quetier, Olivier Panaud, Patrick Wincker, Stephanie Bocs, Claire Lanaud. The genome of Theobroma cacao. Nature Genetics. 2011/02, 43 (2): 101–108 [2018-04-02]. ISSN 1546-1718. doi:10.1038/ng.736 (英语).  [1]
  24. ^ 24.0 24.1 Elizabeth Pennisi. Genomics Researchers Upset by Rivals' Publicity. Science. 2010-09-24, 329 (5999): 1585–1585 [2018-04-02]. ISSN 0036-8075. doi:10.1126/science.329.5999.1585 (英语).  [2]
  25. ^ 25.0 25.1 25.2 Jaillon O, Aury JM, Noel B; 等. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature. September 2007, 449 (7161): 463–7. Bibcode:2007Natur.449..463J. PMID 17721507. doi:10.1038/nature06148.